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1. Connection to the Gateway
In order to use Gateway, you have to meet following requirements:
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NX connection to the Gateway This tutorial assumes that Gateway accounts will be used for starting up Kepler application. |
2. Kepler installation
2.1 Back up
Before you begin, make sure to backup all the Kepler related data in your $HOME directory
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After you have backed up your data, install Kepler
2.2. Kepler installation
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Kepler can be installed by copying its files to user directory, however we recommend "central" (lightweight) installation. In this type of installation, most of the Kepler sources remain on the public directory and a script will add a mirror in your local directory. The real advantage of such approach, beside sparring some disk space in your account, is that patches and bug fixes (especially for ualactors) are distributed automatically to all mirrors without changing anything to your installation. Of course FC2K actors you are creating or installing yourself will remain in the local part of the mirror. |
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Set-up
KEPLER_DIR
system variableCode Block shell> mkdir -p $ITMWORK/mykeplers shell> setenv KEPLER_DIR $ITMWORK/mykeplers
List all available Kepler releases
Code Block shell> list_keplers.sh -all List of available Kepler installations Local installations - local (default) - R3.9/local - R3.10/local - ETS4JET-training/local Central installations - central (default) - rc (release candidate) - R3.9/central - R3.10/central - ETS4JET-training/central
Install chosen version of Kepler
Code Block shell> install_kepler.sh R3.10_central R3.10/central 'tutorial Kepler installation'
Info title install_kepler.sh shell> install_kepler.sh [target dir] [source Kepler] [description] * target dir : chosen directory inside KEPLER_DIR * source Kepler : name of Kepler release (list available through 'list_kepler.sh -all') - local : default Kepler (local) - central : default Kepler (central) - rc : release candidate Kepler (central) - R#.#/local : tagged Kepler version R#.# (local) - R#.#/central : tagged Kepler version R#.# (central) * description : chosen description (e.g. 'this is my test kepler')
List all your Kepler installations
Code Block shell> list_my_keplers.sh Using location at: /pfs/work/bpalak/my_keplers Following kepler installations are ready for use selected type name - 'description' [ ] [Local ] kepler_3.10_loc - 'r3.10 local' [ ] [Central ] kepler_ets - '' [ ] [Central ] R3.10_central - 'tutorial Kepler installation' [x] [Central ] R3_RC_ETS_central - ''
Switch to chosen Kepler
Code Block bash> switch_to_kepler.sh R3.10_central
3. Setting up tutorial environment
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Make sure to initialize database structure. Simply follow the steps below. |
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These tools will be discussed later in the tutorial.
4. Getting tutorial sources and input data
4.1. Copying examples
Copy tutorial examples. You can install them by issuing following command from Terminal.
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shell> mkdir $ITMWORK/tutorials shell> cp -r $SWITMDIR/resources/tutorials/2016-09-Ljubljana $ITMWORK/tutorials |
4.1. Copying input data
Copy data files used throughout the tutorial:
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# copy data files shell> cp $SWITMDIR/resources/tutorials/2016-09-Ljubljana/pulsefiles/* $MDSPLUS_TREE_BASE_0 |
4.1. Set TUTORIAL_DIR variable
Copy tutorial examples. You can install them by issuing following command from Terminal.
shell> setenv TUTORIAL_DIR $ITMWORK/tutorials/2016-09-Ljubljana
5. Varia
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There is a bug related to $PATH variable if you use x2g >= 4.0.3.0. You should use release 4.0.2.0 instead . If you see message similar to this one: JVMJ9VM003W JIT compiler "/afs/rzg/@sys/soft/java/jdk6/bin/javac" not found. Will use interpreter. It might be that you use broken release of x2go |
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