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Create a container and start a shell in it:
Docker on your own computer:
Code Block language bash docker run --interactive --tty --name imas imas/fc2k
uDocker on Gateway:
Code Block language bash export PROOT_NO_SECCOMP=1 ~/.local/bin${WORK}/udocker/udocker create --name=imas imas/fc2k ~/.local/bin/${WORK}/udocker/udocker run imas
In the container shell, execute:
Code Block language bash cat << EOF > put_pf.py import imas if __name__ == '__main__': ids = imas.ids(1, 1, 1, 1) ids.create_env('imas', 'test', '3') ids.pf_active.ids_properties.comment = 'Test data' ids.pf_active.ids_properties.homogeneous_time = 0 ids.pf_active.coil.resize(2) ids.pf_active.coil[0].name = 'COIL 1A' ids.pf_active.coil[1].name = 'COIL 2B' number = 10 ids.pf_active.coil[0].current.data.resize(number) ids.pf_active.coil[0].current.time.resize(number) for i in range(number): ids.pf_active.coil[0].current.data[i] = 2 * i ids.pf_active.coil[0].current.time[i] = i number = number + 2 ids.pf_active.coil[1].current.data.resize(number) ids.pf_active.coil[1].current.time.resize(number) for i in range(number): ids.pf_active.coil[1].current.data[i] = 2 * i + 10 ids.pf_active.coil[1].current.time[i] = i + number ids.pf_active.put() EOF python put_pf.py
Transfer the results to the Gateway:
Docker on your own computer:
Code Block language bash docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.characteristics /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.datafile /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.tree /tmp/ scp /tmp/ids_10001.* login.eufus.eu:public/imasdb/test/3/0/
uDocker on Gateway:
Code Block language bash cp ~${WORK}/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001.* ~/public/imasdb/test/3/0/
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Create a container and start a shell in it:
Docker on your own computer:
Code Block language bash docker run --interactive --tty --name imas imas/fc2k
uDocker on Gateway:
Code Block language bash ~/.local/bin${WORK}/udocker/udocker create --name=imas imas/fc2k ~/.local/bin/${WORK}/udocker/udocker run imas
Transfer the Kepler workflow into the container
Docker on your own computer:
Code Block scp login.eufus.eu:~g2tomz/public/simple-workflow.xml ./ docker cp simple-workflow.xml imas:simple-workflow.xml
uDocker on Gateway:
Code Block cp ~g2tomz/public/simple-workflow.xml ~/.udocker/containers/imas/ROOT/home/imas/
In the container shell, execute:
Code Block language bash cp $IMAS_PREFIX/models/mdsplus/ids_model.characteristics public/imasdb/test/3/0/ids_19998.characteristics cp $IMAS_PREFIX/models/mdsplus/ids_model.datafile public/imasdb/test/3/0/ids_19998.datafile cp $IMAS_PREFIX/models/mdsplus/ids_model.tree public/imasdb/test/3/0/ids_19998.tree kepler -runwf -nogui -user imas /home/imas/simple-workflow.xml
Transfer the results to the Gateway:
Docker on your own computer:
Code Block language bash docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.characteristics /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.datafile /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.tree /tmp/ scp /tmp/ids_10001.* login.eufus.eu:public/imasdb/test/3/0/
uDocker on Gateway:
Code Block language bash cp ~${WORK}/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001.* ~/public/imasdb/test/3/0/
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