...
- Log in to Marconi cluster
Load
intel/pe-xe-2020–binary
moduleCode Block module load intel/pe-xe-2020--binary
Load
intelmpi/2020--binary
moduleCode Block module load intelmpi/2020--binary
Clone spack repository
Code Block git clone https://github.com/spack/spack.git
To ensure the same environment set the
packages.yaml
file as below. This only adds packages marked as external:Expand the
packages.yaml
is located here:Code Block vim ./spack/etc/spack/defaults/packages.yaml
And it should have following body:
Code Block # ------------------------------------------------------------------------- # This file controls default concretization preferences for Spack. # # Settings here are versioned with Spack and are intended to provide # sensible defaults out of the box. Spack maintainers should edit this # file to keep it current. # # Users can override these settings by editing the following files. # # Per-spack-instance settings (overrides defaults): # $SPACK_ROOT/etc/spack/packages.yaml # # Per-user settings (overrides default and site settings): # ~/.spack/packages.yaml # ------------------------------------------------------------------------- packages: cmake: externals: - spec: cmake@3.23.0 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/cmake/3.23.0/gcc/7.3.0 automake: externals: - spec: automake@1.16.5 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/automake/1.16.5/gcc/7.3.0 autoconf: externals: - spec: autoconf@2.69 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/autoconf/2.69/gcc/7.3.0 diffutils: externals: - spec: diffutils@3.8 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/diffutils/3.8/gcc/7.3.0 perl: externals: - spec: perl@5.34.1 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/perl/5.34.1/gcc/7.3.0 tar: externals: - spec: tar@1.34 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/tar/1.34/gcc/7.3.0 gettext: externals: - spec: gettext@0.21 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/gettext/0.21/gcc/7.3.0 libunwind: externals: - spec: libunwind@1.6.2 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/libunwind/1.6.2/gcc/7.3.0 m4: externals: - spec: m4@1.4.19 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/m4/1.4.19/gcc/7.3.0 bison: externals: - spec: bison@3.8.2 prefix: /marconi/home/userexternal/msmukows/spackdir/libs/bison/3.8.2/gcc/7.3.0 all: compiler: [gcc, intel, pgi, clang, xl, nag, fj, aocc] providers: awk: [gawk] blas: [openblas, amdblis] D: [ldc] daal: [intel-daal] elf: [elfutils] fftw-api: [fftw, amdfftw] flame: [libflame, amdlibflame] fuse: [libfuse] gl: [glx, osmesa] glu: [mesa-glu, openglu] golang: [go, gcc] go-external-or-gccgo-bootstrap: [go-bootstrap, gcc] iconv: [libiconv] ipp: [intel-ipp] java: [openjdk, jdk, ibm-java] jpeg: [libjpeg-turbo, libjpeg] lapack: [openblas, amdlibflame] libglx: [mesa+glx, mesa18+glx] libllvm: [llvm] libosmesa: [mesa+osmesa, mesa18+osmesa] lua-lang: [lua, lua-luajit-openresty, lua-luajit] luajit: [lua-luajit-openresty, lua-luajit] mariadb-client: [mariadb-c-client, mariadb] mkl: [intel-mkl] mpe: [mpe2] mpi: [openmpi, mpich] mysql-client: [mysql, mariadb-c-client] opencl: [pocl] onedal: [intel-oneapi-dal] pbs: [openpbs, torque] pil: [py-pillow] pkgconfig: [pkgconf, pkg-config] rpc: [libtirpc] scalapack: [netlib-scalapack, amdscalapack] sycl: [hipsycl] szip: [libaec, libszip] tbb: [intel-tbb] unwind: [libunwind] uuid: [util-linux-uuid, libuuid] xxd: [xxd-standalone, vim] yacc: [bison, byacc] ziglang: [zig] permissions: read: world write: user
Source SPACK to your environment:
Code Block source spack/share/spack/setup-env.sh
Install Python:
Code Block spack install python@3.9.10 +tkinter %intel@19.1.3.304 cflags="-fPIC" cxxflags="-fPIC" cppflags="-fPIC"
Install py-scipy:
Code Block spack install --fail-fast py-scipy %intel@19.1.3.304 cflags="-fPIC" cxxflags="-fPIC" cppflags="-fPIC"
Install py-matplotlib:
Code Block spack install --fail-fast py-matplotlib backend=tkagg %intel@19.1.3.304 cflags="-fPIC" cxxflags="-fPIC" cppflags="-fPIC"
Install py-cython:
Code Block spack install --fail-fast py-cython %intel@19.1.3.304 cflags="-fPIC" cxxflags="-fPIC" cppflags="-fPIC"
Install py-pyyaml:
Code Block spack install --fail-fast py-pyyaml %intel@19.1.3.304 cflags="-fPIC" cxxflags="-fPIC" cppflags="-fPIC"