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| Code Block | ||
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export WORK=/pfs/work/$USER
export SCRATCH=/pfs/scratch/$USER mkdir -p ~/.local/bin ${WORK}/dot-udocker ${SCRATCH}
ln -s ${WORK}/dot-udocker/udocker ~/.udocker
curl -Lwget https://github.com/indigo-dc/udocker/releases/download/v11.3.4/udocker-1.3.4.tar.gz > udocker-1.3.4.tar.gz
tar zxvf udocker-1.3.4.tar.gz > ~/.local/bin/udocker-C ${WORK}/
chmod u+rx ~/.local/bin${WORK}/udocker
echo "tmpdir='${SCRATCH}'" > ~/.udocker/udocker.conf
~/.local/bin
#test udocker exec
${WORK}/udocker/udocker --help
#install
${WORK}/udocker/udocker install |
| Info | ||
|---|---|---|
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The same steps can be repeated on other machines, including HPC or your local computer. Just change WORK and SCRATCH variables in the first two lines. Note, that SCRATCH will be used during import of new images and WORK will be used to store images and files on all running containers. Choose them wisely to accommodate possibly big amount of data. |
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