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Table of Contents
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Introduction

This tutorial assumes that the installation will be performed in the user's $HOME directory, preferably in a public subdirectory. The convention in this manual assumes the following directory structure:

Code Block
languagebash
titleDirectory Structure
$HOME
├── public
│   ├── modules
│   ├── swimas
│   ├── switm
│   └── temp

where:

  • modules - is the location of the modulefiles needed to install the IMAS environment and its dependencies
  • swimas - is the location where the IMAS itself will be installed
  • switm - is the location where all needed dependencies will be installed
  • temp - is the directory used for temporary files like source codes and can be removed after successful installation

 Dependencies

Info
titleNote

Remember to check with module avail <dependency-name> if a given package in a specific version is available in system installations, if so use module load <dependency-name>/<version> to use this installation. If not, follow the steps in the manual.


First, the necessary dependencies for the installation environment must be provided in specific order to be able to install all of them and IMAS itself. The following is a list with the order in which each dependency was installed:

Table of Contents
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  • GCC v8.3.0

    The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. There should be a system installation with the required version on the Marconi cluster. Just use the module to load it as below:

    Code Block
    languagebash
    module load gnu/8.3.0


  • Perl v5

    The v5.16.3 version should be immediately available as part of the system.

  • GNU Autoconf v2.69

    The v2.69 version should be immediately available as part of the system.


  • GNU Automake v1.15

    To install automake version 1.15 follow these steps:


    Normal wayUsing Spack


    1. Code Block
      languagebash
      cd ~/public/temp



    2. Code Block
      languagebash
      wget https://ftp.gnu.org/gnu/automake/automake-1.15.tar.gz



    3. Code Block
      languagebash
      tar -xf automake-1.15.tar.gz



    4. Code Block
      languagebash
      cd automake-1.15


    5. In this tutorial directory path is "~/public/switm/automake/1.15"

      Code Block
      languagebash
      # ./configure --prefix=<directory_path>
./configure --prefix=~/public/switm/automake/1.15



    6. Code Block
      languagebash
      make



    7. Code Block
      languagebash
      make install



    Code Block
    languagebash
    spack install automake@1.15 %gcc@8.3.0










  • Cmake v.3.20.6

    Normal wayUsing Spack


    1. Code Block
      languagebash
      cd ~/public/temp



    2. Code Block
      languagebash
      wget https://github.com/Kitware/CMake/releases/download/v3.20.6/cmake-3.20.6.tar.gz



    3. Code Block
      languagebash
      tar -xf cmake-3.20.6.tar.gz



    4. Code Block
      languagebash
      cd cmake-3.20.6.tar.gz


    5. In this tutorial directory path is "~/public/switm/cmake/3.20.6"

      Code Block
      languagebash
      # ./configure --prefix=<directory_path>
./configure --prefix=~/public/switm/cmake/3.20.6



    6. Code Block
      languagebash
      make



    7. Code Block
      languagebash
      make install



    Code Block
    languagebash
    spack install cmake@3.20.6 %gcc@8.3.0










  • Python v3.7.10

    Normal wayUsing Spack


    1. Code Block
      languagebash
      cd ~/public/temp



    2. Code Block
      languagebash
      wget https://www.python.org/ftp/python/3.7.10/Python-3.7.10.tgz



    3. Code Block
      languagebash
      tar -xf Python-3.7.10.tgz



    4. Code Block
      languagebash
      cd Python-3.7.10.tgz


    5. In this tutorial directory path is "~/public/switm/python/3.7.10"

      Code Block
      languagebash
      # ./configure --prefix=<directory_path>
./configure --prefix=~/public/switm/python/3.7.10



    6. Code Block
      languagebash
      make



    7. Code Block
      languagebash
      make install



    Code Block
    languagebash
    spack install python@3.7.10










  • Cython 0.29.23

    Normal wayUsing Spack


    1. Code Block
      languagebash
      cd ~/public/temp



    2. Code Block
      languagebash
      wget https://files.pythonhosted.org/packages/source/c/cython/Cython-0.29.23.tar.gz



    3. Code Block
      languagebash
      tar -xf Cython-0.29.23.tar.gz



    4. Code Block
      languagebash
      cd Cython-0.29.23.tar.gz


    5. In this tutorial directory path is "~/public/switm/cython/0.29.23"

      Code Block
      languagebash
      python setup.py install --prefix=~/public/switm/cython/0.29.23



    Code Block
    languagebash
    spack install py-cython@0.29.23









  • Java Development Kit v1.8.0_111

There should be a system installation with the required version on the Marconi cluster. Just use the module to load it as below:

Code Block
languagebash
module load jdk/1.8.0_111


  • Intel Parallel Studio XE 2020

There should be a system installation with the required version on the Marconi cluster. Just use the module to load it as below:

Code Block
languagebash
module load intel/pe-xe-2020--binary


  • Git v2.17.0

There should be a system installation with the required version on the Marconi cluster. Just use the module to load it as below:

Code Block
languagebash
module load git/2.17


  • Saxon v9

Normal way


  1. Code Block
    languagebash
    cd ~/public/temp



  2. Code Block
    languagebash
    wget http://www.saxonica.com/download/SaxonPE9-6-0-10J.zip



  3. Code Block
    languagebash
    unzip -d source/ download.zip


  • Blitz++ v1.0.2

Normal wayUsing Spack


  1. Code Block
    languagebash
    cd ~/public/temp



  2. Code Block
    languagebash
    wget https://github.com/blitzpp/blitz/archive/refs/tags/1.0.2.zip



  3. Code Block
    languagebash
    unzip 1.0.2.zip



  4. Code Block
    languagebash
    cd blitz-1.0.2



  5. Code Block
    languagebash
    mkdir build && cd build


  6. In this tutorial directory path is "~/public/switm/blitz/1.0.2"

    Code Block
    languagebash
    cmake -DCMAKE_INSTALL_PREFIX=~/public/switm/blitz/1.0.2 ..



  7. Code Block
    languagebash
    make lib



  8. Code Block
    languagebash
    make install



Code Block
languagebash
spack install blitz@1.0.1 %gcc@8.3.0









  • MdsPlus v7.96.17

Normal wayUsing Spack


  1. Code Block
    languagebash
    cd ~/public/temp



  2. Code Block
    languagebash
    wget https://github.com/MDSplus/mdsplus/archive/refs/tags/stable_release-7-96-17.zip



  3. Code Block
    languagebash
    unzip stable_release-7-96-17.zip



  4. Code Block
    languagebash
    cd mdsplus-stable_release-7-96-17/



  5. Code Block
    languagebash
    ./bootstrap


  6. In this tutorial directory path is "~/public/switm/mdsplus/7.96.17"

    Code Block
    languagebash
    ./configure --prefix=~/public/switm/mdsplus/7.96.17



  7. Code Block
    languagebash
    make



  8. Code Block
    languagebash
    make install



Code Block
languagebash
spack install mdsplus@7.96.17 %gcc@8.3.0