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The following modules need to be loaded e.g. by including in the ~/.bashrc
Code Block module purge module load cineca module load intel/pe-xe-2017--binary module load intelmpi/2017--binary module load mkl/2017--binary module load fftw/3.3.4--intelmpi--2017--binary module load szip/2.1--gnu--6.1.0 module load zlib/1.2.8--gnu--6.1.0 module load hdf5/1.8.17--intelmpi--2017--binary
Before compilation one has to specify which compiler and libraries will be used. This depends on the machine. For the Eurofusion Gateway the following Makefile.inc for compiling JOREK needs to be copied to JOREK repository directory
Code Block title Makefile.inc collapse true # --- Select physics model MODEL = model303 # --- Compiler and options FC = mpiifort CC = mpiicc CXX = mpiicpc FFLAGS += -O3 FFLAGS += -vecabi=compat -mcmodel=medium # --- Various switches USE_PASTIX = 1 USE_PASTIX_MURGE = 0 USE_COMPLEX_PRECOND = 0 USE_STRUMPACK = 0 USE_HDF5 = 1 USE_FFTW = 1 USE_MUMPS = 0 USE_DIRECT_CONSTRUCTION = 0 USE_BLOCK = 1 LIBDIR = /afs/eufus.eu/user/g/g2iholod/public LIBS += -liomp5 -pthread -ldl -lm ifeq (1, $(USE_MUMPS)) # --- MUMPS MKLLIB= -L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 \ -lmkl_intel_thread -lmkl_core -lmkl_blacs_intelmpi_lp64 MKLINC = -I${MKL_HOME}/include MUMPSDIR = $(LIBDIR)/MUMPS_5.2.1 LIB_MUMPS = -L$(MUMPSDIR)/lib -ldmumps -ldmumps -lmumps_common -lpord INC_MUMPS = $(MUMPSDIR)/include LIB_MUMPS += $(MKLLIB) INC_MUMPS += $(MKLINC) endif ################## ifeq (1, $(USE_PASTIX)) MKLLIB = -L${MKL_HOME}/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core MKLINC = -I${MKL_HOME}/include INC_PASTIX += $(MKLINC) LIB_PASTIX += $(MKLLIB) PASTIX_DIR=$(LIBDIR)/pastix_5.2.3/install SCOTCH_DIR=$(LIBDIR)/scotch_5.1.12 LIB_PASTIX += $(PASTIX_DIR)/libpastix.a $(SCOTCH_DIR)/lib/libscotch.a $(SCOTCH_DIR)/lib/libscotcherr.a INC_PASTIX += -I$(PASTIX_DIR) endif ################## ifeq (1, $(USE_STRUMPACK)) MKLLIB= -L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 \ -lmkl_intel_thread -lmkl_core -lmkl_blacs_intelmpi_lp64 MKLINC = -I${MKL_HOME}/include PARMETIS_HOME=$(LIBDIR)/parmetis-4.0.3/build STRUMPACK_HOME=$(LIBDIR)/STRUMPACK_MKL/install STRUMPACKINC = -I$(STRUMPACK_HOME)/include STRUMPACKLIB = $(STRUMPACK_HOME)/lib/libstrumpack.a STRUMPACKINC += -I$(PARMETIS_HOME)/include STRUMPACKLIB += $(PARMETIS_HOME)/libparmetis/libparmetis.a STRUMPACKINC += -I$(PARMETIS_HOME)/metis/include STRUMPACKLIB += $(PARMETIS_HOME)/libmetis/libmetis.a STRUMPACKINC += $(MKLINC) STRUMPACKLIB += $(MKLLIB) DEFINES += -DNEWSPK endif ################## LIBFFTW = $(FFTW_LIB)/libfftw3f.a INC_FFTW = -I$(FFTW_INC) HDF5INCLUDE = $(HDF5_HOME)/include HDF5LIB =-L$(HDF5_HOME)/lib -lhdf5hl_fortran -lhdf5_hl -lhdf5_fortran -lhdf5 -L$(SZIP_LIB) -lsz -lz