...
| Code Block |
|---|
sumi -r -j test -m marconi |
The output will first show how the job is being configured and how the connection is set up
| No Format |
|---|
2018/12/19 17:09:47 |
...
INFO SUMI: Starting |
...
2018/12/19 17:09:47 |
...
INFO SUMI: Reading local configuration |
...
2018/12/19 17:09:47 |
...
INFO Job: configuring |
...
2018/12/19 17:09:52 |
...
INFO SUMI: uploading files |
...
2018/12/19 17:09:52 |
...
INFO Connected (version 2.0, client OpenSSH_6.6.1) |
...
2018/12/19 17:09:53 |
...
INFO Authentication (publickey) successful! |
Copy the files from GatrGateway to Marconi
| No Format |
|---|
2018/12/19 17:09:54 |
...
INFO [chan 0] Opened sftp connection (server version 3) |
...
2018/12/19 17:09:54 |
...
INFO SUMI: scp /afs/eufus.eu/g2itmdev/user/USER/mywf/simple-workflow. |
...
xml /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/ |
...
2018/12/19 17:09:54 |
...
INFO SUMI: scp /afs/eufus.eu/g2itmdev/user/USER/mywf/script. |
...
sh /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/ |
...
2018/12/19 17:09:54 |
...
INFO [chan 0] sftp session closed. |
Submit the job to the remote queueing system of Marconi and wait for the job to finish
| No Format |
|---|
2018/12/19 17:09:59 |
...
INFO Job: starting |
...
2018/12/19 17:09:59 |
...
INFO Job: ID [slurm+ssh://login.marconi.cineca.it]-[ |
...
3264873] |
...
2018/12/19 17:10:03 |
...
INFO Job: state Pending |
...
2018/12/19 17:10:03 |
...
INFO Job: waiting |
...
2018/12/19 17:17:13 |
...
INFO Job: State Done |
...
2018/12/19 17:17:13 |
...
INFO Job: Exitcode 0 |
Once it has finished SUMI retrieves the results and finishes
| No Format |
|---|
2018/12/19 17:17:13 |
...
INFO SUMI: downloading files |
...
2018/12/19 17:17:13 |
...
INFO Connected (version 2.0, client OpenSSH_6.6.1) |
...
2018/12/19 17:17:14 |
...
INFO Authentication (publickey) successful! |
...
2018/12/19 17:17:14 |
...
INFO [chan 1] Opened sftp connection (server version 3) |
...
2018/12/19 17:17:14 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001. |
...
characteristics /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:23 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001. |
...
datafile /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:23 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001. |
...
tree /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:31 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_19999. |
...
characteristics /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:39 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_19999. |
...
datafile /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:39 |
...
INFO SUMI: scp /marconi/home/userexternal/USER/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_19999. |
...
tree /afs/eufus.eu/g2itmdev/user/user/public/imasdb/test/3/0/ |
...
2018/12/19 17:17:47 |
...
INFO [chan 1] sftp session closed. |
...
2018/12/19 17:17:47 |
...
INFO SUMI: Done |
This will copy the files, run the workflow and retrieve the output results. Once we have them we can check whether the
| Code Block |
|---|
idsdump 1 1 pf_active |
And results are correct by running idsdump this will show the correct structure of the IDS generated which will demonstrate that the stricture is correct and that they were generated correctly..
| Code Block |
|---|
idsdump 1 1 pf_active |