Page History

...

Demonstration 2: Kepler workflow

• Create a container and start a shell in it:

  • Docker on your own computer:

    Code Block
    language bash
    docker run --interactive --tty --name imas imas/fc2k

  • uDocker on Gateway:

    Code Block
    language bash
    ~/.local/bin/udocker create --name=imas imas/fc2k ~/.local/bin/udocker run imas

• Transfer the Kepler workflow into the container

  • Docker on your own computer:

    Code Block
    scp login.eufus.eu:~g2tomz/public/simple-workflow.xml ./ docker cp simple-workflow.xml imas:simple-workflow.xml

  • uDocker on Gateway:

    Code Block
    cp ~g2tomz/public/simple-workflow.xml ~/.udocker/containers/imas/ROOT/home/imas/

    
    

• In the container shell, execute:

  Code Block
  language bash
  kepler -runwf -nogui -user imas /home/imas/simple-workflow.xml

• Transfer the results to the Gateway:

  • Docker on your own computer:

    Code Block
    language bash
    docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.characteristics /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.datafile /tmp/ docker cp imas:/home/imas/public/imasdb/test/3/0/ids_10001.tree /tmp/ scp /tmp/ids_10001.* login.eufus.eu:public/imasdb/test/3/0/

  • uDocker on Gateway:

    Code Block
    language bash
    cp ~/.udocker/containers/imas/ROOT/home/imas/public/imasdb/test/3/0/ids_10001.* ~/public/imasdb/test/3/0/

...