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In the case of Bash shells (most used shells) source
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source sumi-virtualenv/bin/activate |
Our terminal prompt will now show the folder name in front of out username in the following way:
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[sumi-virtualenv] <g2user@s65 |
To install the dependencies, now we can run the "pip" command which will install the python libraries in our local virtualenv pip install
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pip install saga-python==0.50.01 paramiko |
Once the dependencies have been installed, we can download and configure SUMI. To retrieve the code, clone the code from the repository git clone
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git clone https://albertbsc@bitbucket.org/albertbsc/sumi.git |
This will create a local folder named "sumi". To include it in the $PATH environment variable we need to run the software.
For TCSH shell systems (as Gateway)
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setenv PATH $PATH\:$HOME/sumi/bin |
For Bash shells export
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export PATH=$PATH:$PWD/sumi/bin/ |
SUMI requires two configuration job files which contain the information of the jobs to be sumitted and the HPC cluster where we are going to submit. For this we need to create the configuration folder and copy the configuration files jobs.conf and servers.conf from sumi/conf/ directory. mkdir
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mkdir $HOME/.sumi |
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cp sumi/conf/*.conf $HOME/.sumi |
Now, we are ready to run SUMI. Execute the option "-h" to see all the
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